Journal of Clinical and Diagnostic Research, ISSN - 0973 - 709X

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Dr Mohan Z Mani

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Believers Church Medical College,
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On Sep 2018




Prof. Somashekhar Nimbalkar

"Over the last few years, we have published our research regularly in Journal of Clinical and Diagnostic Research. Having published in more than 20 high impact journals over the last five years including several high impact ones and reviewing articles for even more journals across my fields of interest, we value our published work in JCDR for their high standards in publishing scientific articles. The ease of submission, the rapid reviews in under a month, the high quality of their reviewers and keen attention to the final process of proofs and publication, ensure that there are no mistakes in the final article. We have been asked clarifications on several occasions and have been happy to provide them and it exemplifies the commitment to quality of the team at JCDR."



Prof. Somashekhar Nimbalkar
Head, Department of Pediatrics, Pramukhswami Medical College, Karamsad
Chairman, Research Group, Charutar Arogya Mandal, Karamsad
National Joint Coordinator - Advanced IAP NNF NRP Program
Ex-Member, Governing Body, National Neonatology Forum, New Delhi
Ex-President - National Neonatology Forum Gujarat State Chapter
Department of Pediatrics, Pramukhswami Medical College, Karamsad, Anand, Gujarat.
On Sep 2018




Dr. Kalyani R

"Journal of Clinical and Diagnostic Research is at present a well-known Indian originated scientific journal which started with a humble beginning. I have been associated with this journal since many years. I appreciate the Editor, Dr. Hemant Jain, for his constant effort in bringing up this journal to the present status right from the scratch. The journal is multidisciplinary. It encourages in publishing the scientific articles from postgraduates and also the beginners who start their career. At the same time the journal also caters for the high quality articles from specialty and super-specialty researchers. Hence it provides a platform for the scientist and researchers to publish. The other aspect of it is, the readers get the information regarding the most recent developments in science which can be used for teaching, research, treating patients and to some extent take preventive measures against certain diseases. The journal is contributing immensely to the society at national and international level."



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Professor and Head
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Sri Devaraj Urs Medical College
Sri Devaraj Urs Academy of Higher Education and Research , Kolar, Karnataka
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Dr. Saumya Navit

"As a peer-reviewed journal, the Journal of Clinical and Diagnostic Research provides an opportunity to researchers, scientists and budding professionals to explore the developments in the field of medicine and dentistry and their varied specialities, thus extending our view on biological diversities of living species in relation to medicine.
‘Knowledge is treasure of a wise man.’ The free access of this journal provides an immense scope of learning for the both the old and the young in field of medicine and dentistry as well. The multidisciplinary nature of the journal makes it a better platform to absorb all that is being researched and developed. The publication process is systematic and professional. Online submission, publication and peer reviewing makes it a user-friendly journal.
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I wish JCDR a great success and I hope that journal will soar higher with the passing time."



Dr Saumya Navit
Professor and Head
Department of Pediatric Dentistry
Saraswati Dental College
Lucknow
On Sep 2018




Dr. Arunava Biswas

"My sincere attachment with JCDR as an author as well as reviewer is a learning experience . Their systematic approach in publication of article in various categories is really praiseworthy.
Their prompt and timely response to review's query and the manner in which they have set the reviewing process helps in extracting the best possible scientific writings for publication.
It's a honour and pride to be a part of the JCDR team. My very best wishes to JCDR and hope it will sparkle up above the sky as a high indexed journal in near future."



Dr. Arunava Biswas
MD, DM (Clinical Pharmacology)
Assistant Professor
Department of Pharmacology
Calcutta National Medical College & Hospital , Kolkata




Dr. C.S. Ramesh Babu
" Journal of Clinical and Diagnostic Research (JCDR) is a multi-specialty medical and dental journal publishing high quality research articles in almost all branches of medicine. The quality of printing of figures and tables is excellent and comparable to any International journal. An added advantage is nominal publication charges and monthly issue of the journal and more chances of an article being accepted for publication. Moreover being a multi-specialty journal an article concerning a particular specialty has a wider reach of readers of other related specialties also. As an author and reviewer for several years I find this Journal most suitable and highly recommend this Journal."
Best regards,
C.S. Ramesh Babu,
Associate Professor of Anatomy,
Muzaffarnagar Medical College,
Muzaffarnagar.
On Aug 2018




Dr. Arundhathi. S
"Journal of Clinical and Diagnostic Research (JCDR) is a reputed peer reviewed journal and is constantly involved in publishing high quality research articles related to medicine. Its been a great pleasure to be associated with this esteemed journal as a reviewer and as an author for a couple of years. The editorial board consists of many dedicated and reputed experts as its members and they are doing an appreciable work in guiding budding researchers. JCDR is doing a commendable job in scientific research by promoting excellent quality research & review articles and case reports & series. The reviewers provide appropriate suggestions that improve the quality of articles. I strongly recommend my fraternity to encourage JCDR by contributing their valuable research work in this widely accepted, user friendly journal. I hope my collaboration with JCDR will continue for a long time".



Dr. Arundhathi. S
MBBS, MD (Pathology),
Sanjay Gandhi institute of trauma and orthopedics,
Bengaluru.
On Aug 2018




Dr. Mamta Gupta,
"It gives me great pleasure to be associated with JCDR, since last 2-3 years. Since then I have authored, co-authored and reviewed about 25 articles in JCDR. I thank JCDR for giving me an opportunity to improve my own skills as an author and a reviewer.
It 's a multispecialty journal, publishing high quality articles. It gives a platform to the authors to publish their research work which can be available for everyone across the globe to read. The best thing about JCDR is that the full articles of all medical specialties are available as pdf/html for reading free of cost or without institutional subscription, which is not there for other journals. For those who have problem in writing manuscript or do statistical work, JCDR comes for their rescue.
The journal has a monthly publication and the articles are published quite fast. In time compared to other journals. The on-line first publication is also a great advantage and facility to review one's own articles before going to print. The response to any query and permission if required, is quite fast; this is quite commendable. I have a very good experience about seeking quick permission for quoting a photograph (Fig.) from a JCDR article for my chapter authored in an E book. I never thought it would be so easy. No hassles.
Reviewing articles is no less a pain staking process and requires in depth perception, knowledge about the topic for review. It requires time and concentration, yet I enjoy doing it. The JCDR website especially for the reviewers is quite user friendly. My suggestions for improving the journal is, more strict review process, so that only high quality articles are published. I find a a good number of articles in Obst. Gynae, hence, a new journal for this specialty titled JCDR-OG can be started. May be a bimonthly or quarterly publication to begin with. Only selected articles should find a place in it.
An yearly reward for the best article authored can also incentivize the authors. Though the process of finding the best article will be not be very easy. I do not know how reviewing process can be improved. If an article is being reviewed by two reviewers, then opinion of one can be communicated to the other or the final opinion of the editor can be communicated to the reviewer if requested for. This will help one’s reviewing skills.
My best wishes to Dr. Hemant Jain and all the editorial staff of JCDR for their untiring efforts to bring out this journal. I strongly recommend medical fraternity to publish their valuable research work in this esteemed journal, JCDR".



Dr. Mamta Gupta
Consultant
(Ex HOD Obs &Gynae, Hindu Rao Hospital and associated NDMC Medical College, Delhi)
Aug 2018




Dr. Rajendra Kumar Ghritlaharey

"I wish to thank Dr. Hemant Jain, Editor-in-Chief Journal of Clinical and Diagnostic Research (JCDR), for asking me to write up few words.
Writing is the representation of language in a textual medium i e; into the words and sentences on paper. Quality medical manuscript writing in particular, demands not only a high-quality research, but also requires accurate and concise communication of findings and conclusions, with adherence to particular journal guidelines. In medical field whether working in teaching, private, or in corporate institution, everyone wants to excel in his / her own field and get recognised by making manuscripts publication.


Authors are the souls of any journal, and deserve much respect. To publish a journal manuscripts are needed from authors. Authors have a great responsibility for producing facts of their work in terms of number and results truthfully and an individual honesty is expected from authors in this regards. Both ways its true "No authors-No manuscripts-No journals" and "No journals–No manuscripts–No authors". Reviewing a manuscript is also a very responsible and important task of any peer-reviewed journal and to be taken seriously. It needs knowledge on the subject, sincerity, honesty and determination. Although the process of reviewing a manuscript is a time consuming task butit is expected to give one's best remarks within the time frame of the journal.
Salient features of the JCDR: It is a biomedical, multidisciplinary (including all medical and dental specialities), e-journal, with wide scope and extensive author support. At the same time, a free text of manuscript is available in HTML and PDF format. There is fast growing authorship and readership with JCDR as this can be judged by the number of articles published in it i e; in Feb 2007 of its first issue, it contained 5 articles only, and now in its recent volume published in April 2011, it contained 67 manuscripts. This e-journal is fulfilling the commitments and objectives sincerely, (as stated by Editor-in-chief in his preface to first edition) i e; to encourage physicians through the internet, especially from the developing countries who witness a spectrum of disease and acquire a wealth of knowledge to publish their experiences to benefit the medical community in patients care. I also feel that many of us have work of substance, newer ideas, adequate clinical materials but poor in medical writing and hesitation to submit the work and need help. JCDR provides authors help in this regards.
Timely publication of journal: Publication of manuscripts and bringing out the issue in time is one of the positive aspects of JCDR and is possible with strong support team in terms of peer reviewers, proof reading, language check, computer operators, etc. This is one of the great reasons for authors to submit their work with JCDR. Another best part of JCDR is "Online first Publications" facilities available for the authors. This facility not only provides the prompt publications of the manuscripts but at the same time also early availability of the manuscripts for the readers.
Indexation and online availability: Indexation transforms the journal in some sense from its local ownership to the worldwide professional community and to the public.JCDR is indexed with Embase & EMbiology, Google Scholar, Index Copernicus, Chemical Abstracts Service, Journal seek Database, Indian Science Abstracts, to name few of them. Manuscriptspublished in JCDR are available on major search engines ie; google, yahoo, msn.
In the era of fast growing newer technologies, and in computer and internet friendly environment the manuscripts preparation, submission, review, revision, etc and all can be done and checked with a click from all corer of the world, at any time. Of course there is always a scope for improvement in every field and none is perfect. To progress, one needs to identify the areas of one's weakness and to strengthen them.
It is well said that "happy beginning is half done" and it fits perfectly with JCDR. It has grown considerably and I feel it has already grown up from its infancy to adolescence, achieving the status of standard online e-journal form Indian continent since its inception in Feb 2007. This had been made possible due to the efforts and the hard work put in it. The way the JCDR is improving with every new volume, with good quality original manuscripts, makes it a quality journal for readers. I must thank and congratulate Dr Hemant Jain, Editor-in-Chief JCDR and his team for their sincere efforts, dedication, and determination for making JCDR a fast growing journal.
Every one of us: authors, reviewers, editors, and publisher are responsible for enhancing the stature of the journal. I wish for a great success for JCDR."



Thanking you
With sincere regards
Dr. Rajendra Kumar Ghritlaharey, M.S., M. Ch., FAIS
Associate Professor,
Department of Paediatric Surgery, Gandhi Medical College & Associated
Kamla Nehru & Hamidia Hospitals Bhopal, Madhya Pradesh 462 001 (India)
E-mail: drrajendrak1@rediffmail.com
On May 11,2011




Dr. Shankar P.R.

"On looking back through my Gmail archives after being requested by the journal to write a short editorial about my experiences of publishing with the Journal of Clinical and Diagnostic Research (JCDR), I came across an e-mail from Dr. Hemant Jain, Editor, in March 2007, which introduced the new electronic journal. The main features of the journal which were outlined in the e-mail were extensive author support, cash rewards, the peer review process, and other salient features of the journal.
Over a span of over four years, we (I and my colleagues) have published around 25 articles in the journal. In this editorial, I plan to briefly discuss my experiences of publishing with JCDR and the strengths of the journal and to finally address the areas for improvement.
My experiences of publishing with JCDR: Overall, my experiences of publishing withJCDR have been positive. The best point about the journal is that it responds to queries from the author. This may seem to be simple and not too much to ask for, but unfortunately, many journals in the subcontinent and from many developing countries do not respond or they respond with a long delay to the queries from the authors 1. The reasons could be many, including lack of optimal secretarial and other support. Another problem with many journals is the slowness of the review process. Editorial processing and peer review can take anywhere between a year to two years with some journals. Also, some journals do not keep the contributors informed about the progress of the review process. Due to the long review process, the articles can lose their relevance and topicality. A major benefit with JCDR is the timeliness and promptness of its response. In Dr Jain's e-mail which was sent to me in 2007, before the introduction of the Pre-publishing system, he had stated that he had received my submission and that he would get back to me within seven days and he did!
Most of the manuscripts are published within 3 to 4 months of their submission if they are found to be suitable after the review process. JCDR is published bimonthly and the accepted articles were usually published in the next issue. Recently, due to the increased volume of the submissions, the review process has become slower and it ?? Section can take from 4 to 6 months for the articles to be reviewed. The journal has an extensive author support system and it has recently introduced a paid expedited review process. The journal also mentions the average time for processing the manuscript under different submission systems - regular submission and expedited review.
Strengths of the journal: The journal has an online first facility in which the accepted manuscripts may be published on the website before being included in a regular issue of the journal. This cuts down the time between their acceptance and the publication. The journal is indexed in many databases, though not in PubMed. The editorial board should now take steps to index the journal in PubMed. The journal has a system of notifying readers through e-mail when a new issue is released. Also, the articles are available in both the HTML and the PDF formats. I especially like the new and colorful page format of the journal. Also, the access statistics of the articles are available. The prepublication and the manuscript tracking system are also helpful for the authors.
Areas for improvement: In certain cases, I felt that the peer review process of the manuscripts was not up to international standards and that it should be strengthened. Also, the number of manuscripts in an issue is high and it may be difficult for readers to go through all of them. The journal can consider tightening of the peer review process and increasing the quality standards for the acceptance of the manuscripts. I faced occasional problems with the online manuscript submission (Pre-publishing) system, which have to be addressed.
Overall, the publishing process with JCDR has been smooth, quick and relatively hassle free and I can recommend other authors to consider the journal as an outlet for their work."



Dr. P. Ravi Shankar
KIST Medical College, P.O. Box 14142, Kathmandu, Nepal.
E-mail: ravi.dr.shankar@gmail.com
On April 2011
Anuradha

Dear team JCDR, I would like to thank you for the very professional and polite service provided by everyone at JCDR. While i have been in the field of writing and editing for sometime, this has been my first attempt in publishing a scientific paper.Thank you for hand-holding me through the process.


Dr. Anuradha
E-mail: anuradha2nittur@gmail.com
On Jan 2020

Important Notice

Original article / research
Year : 2023 | Month : September | Volume : 17 | Issue : 9 | Page : EC01 - EC05 Full Version

Association of Clinicopathological Profile and Immunohistochemical Expression of KRAS and BRAF in Colorectal Carcinoma: A Cross-sectional Study


Published: September 1, 2023 | DOI: https://doi.org/10.7860/JCDR/2023/63553.18398
Mandira Mitra, Suman Ghosh, Niladri Sarkar, Anadi Roy Chowdhury

1. Postgraduate Trainee (Junior Resident), Department of Pathology, Murshidabad Medical College and Hospital, Berhampore, West Bengal, India. 2. Associate Professor, Department of Pathology, Murshidabad Medical College and Hospital, Berhampore, West Bengal, India. 3. Associate Professor, Department of Surgery, Murshidabad Medical College and Hospital, Berhampore, West Bengal, India. 4. Professor, Department of Pathology, Murshidabad Medical College and Hospital, Berhampore, West Bengal, India.

Correspondence Address :
Dr. Anadi Roy Chowdhury,
Professor, Department of Pathology, Murshidabad Medical College and Hospital, Berhampore-742101, West Bengal, India.
E-mail: abantipada@gmail.com

Abstract

Introduction: Colorectal Carcinoma (CRC) is a multi-step process that occurs due to the accumulation of several genetic alterations. The most important alterations are related to the rat sarcoma viral oncogene homolog (RAS) and Rapidly Accelerated Fibrosarcoma (RAF), which have been implicated as key intermediates in the RAS-mediated signalling cascade. However, the levels of Kristen Rat Sarcoma Virus (KRAS) and v-raf Murine Sarcoma Viral Oncogene Homolog (BRAF) protein expression and their prognostic evaluation in CRC patients remain unknown.

Aim: To investigate the immunohistochemical expression of KRAS and BRAF proteins in CRC.

Materials and Methods: The present institutional-based cross-sectional observational study was conducted in a tertiary care centre in West Bengal, specifically in the Department of Pathology in collaboration with the Department of Surgery at Murshidabad Medical College and Hospital, Berhampore, West Bengal, India. A total of 26 CRC cases were enrolled in the present study, received over a period of one and a half years from January 2021 to June 2022. The parameters studied included demographic and clinical information of the patients, histopathological findings, pathological grade and stage of carcinoma, and immunohistochemical findings for KRAS and BRAF. For statistical analysis, data were entered into Microsoft (MS) Excel. Descriptive measures such as mean±Standard Deviation (SD), range, and percentage were used. The Chi-square test was used to determine the significance of the study.

Results: A total of biopsy-proven CRC specimens were studied, consisting of 17 male patients (65.38%) with a male-to-female ratio of 1.9:1. The most common age group involved was 51-60 years (38%). Conventional adenocarcinoma accounted for the majority of cases (85%), with mucinous carcinoma comprising the remaining 15%. Among the 26 cases, 15 (58%) showed KRAS positivity, which was significantly associated with tumour grade and stage. Most of the cases were BRAF-negative. Out of the 21 cases where either KRAS or BRAF or both were positive, 20 cases showed high T stage (T3 and T4) and/or metastatic lesions (p-value 0.001). All four cases that were negative for both BRAF and KRAS belonged to the low T stage.

Conclusion: A significant correlation was observed between the expression of KRAS and high-grade, high pathological Tumour, Node, Metastasis (TNM) T stage (T3 and T4) CRC. Therefore, KRAS Immunohistochemistry (IHC) biomarkers should be included in the standard diagnostic protocol for colorectal cancer, as they help identify KRAS-positive CRC cases that are resistant to targeted immunotherapy.

Keywords

Immunohistochemistry, Kristen rat sarcoma virus, V-raf murine sarcoma viral oncogene homolog

The CRC is one of the deadliest cancers and the leading cause of cancer-related deaths in developed countries. It stands as the third most common malignancy in men and the second most common in women worldwide (1). In India, CRC occupies the fifth most common position following breast, cervix/uterus, oral cavity, and lung cancers (2). The dietary factors most associated with an increased risk of CRC are low consumption of unabsorbable vegetables and fibre, as well as a high intake of refined fats and carbohydrates. Smoking, alcohol intake, and increased body weight also increase the risk of cancer. With each unit increase in Body Mass Index (BMI), the risk for CRC increases by 2-3%. Patients with type 2 diabetes mellitus also have an increased risk of colorectal cancer (3).

The KRAS protein belongs to the large superfamily of guanine Guanosine-50-Triphosphate (GTP) and guanine Guanosine-50-Diphosphate (GDP) binding proteins and plays a powerful downstream effector role in the Epidermal Growth Factor Receptor (EGFR) transduction cascade. Somatic KRAS mutations are detected in about 40% of CRC patients and lead to an abnormal affinity of KRAS for GTP, resulting in permanent activation of the transduction cascade. BRAF, a member of the RAS/RAF family, encodes a serine-threonine protein kinase involved in the Mitogen-Activated Protein Kinase (MAPK) signalling cascade. BRAF acts as a direct effector of RAS and promotes tumour growth, proliferation, and survival through the activation of Mitogen-activated Protein Kinase (MAPK/ERK kinase). Current researchers mostly focus on the theory of heterogeneity of CRC, which highlights the differences in the KRAS mutational status between primary and metastatic tumours (4).

The IHC is a less time-consuming and less expensive alternate procedure to identify genetic mutations. The levels of KRAS and BRAF protein expression and their prognostic evaluation in CRC patients remain unknown. Some studies have found that KRAS mutation in colorectal cancer is associated with a poor response to EGFR inhibitors Cetuximab and Panitumumab and resistance to chemotherapy (5). The aim of the present study was to analyse the clinical and histopathological features of CRC and identify the occurrence of BRAF and KRAS mutations in CRC patients through immunohistochemical studies, helping to redefine targeted therapy and chemotherapy. Although molecular studies have been carried out on KRAS and BRAF in CRC, very few studies have highlighted the importance of IHC in identifying the expression of KRAS and BRAF (6),(7). The present study is the first of its kind in eastern India to highlight the importance of immunomarkers (BRAF and KRAS) in CRC.

To determine the clinical and epidemiological profile and immunohistochemical expression of KRAS and BRAF in CRC at a tertiary care hospital in West Bengal and to estimate the distribution of KRAS and BRAF expression among CRC patients through IHC.

Material and Methods

An Institutional-based cross-sectional observational study was conducted in a tertiary care centre in West Bengal in the Department of Pathology in collaboration with the Department of Surgery at Murshidabad Medical College and Hospital, Berhampore, West Bengal, India. The study spanned one and a half years, from January 2021 to June 2022. Ethical clearance was obtained from the Institutional Ethical Committee (IEC no- MSD/MCH/PR/2376/2020, dated 21/12/2020), and informed consent was obtained from the study population.

Inclusion and Exclusion criteria: The study included all patients clinically and histologically confirmed to have Colorectal Cancer (CRC) who attended the Outpatient Department (OPD) or were admitted to Murshidabad Medical College and Hospital during the study period. Trained histopathologists conducted the reporting, and tissue samples from all cases that fulfilled the inclusion and exclusion criteria were sent to the Pathology Department for routine histopathological examination.

Study Procedure

All tissue samples were collected in 10% buffered formalin and processed for routine histopathological examination. Grossing and reporting of specimens suggestive of colorectal adenocarcinoma were conducted according to the College of American Pathologists (CAP) protocol (8). Histopathological diagnosis was made by cutting 5-micrometer thick sections from formalin-fixed paraffin-embedded blocks and staining them with Haematoxylin and Eosin (H&E).

The study considered epidemiological and clinical parameters of the patients, histopathological findings, pathological grade and stage of carcinoma, and immunohistochemical findings. The classification of histological type was based on the TNM stage of CRC as advocated by the International Agency for Research on Cancer and World Health Organisation (WHO) 2019 (9).

Immunohistochemistry (IHC): Samples that tested positive for colon cancer by histopathology underwent further analysis using IHC markers. The positivity of IHC expression was reported using a standard procedure and scoring pattern. The clone for KRAS Rabbit Monoclonal Antibody was 2J13, and for BRAF V600E Rabbit Monoclonal Antibody, the clone used was RM8. The study examined the association of KRAS and BRAF expression with respect to histological type, grade, and stage of cancer. For IHC staining, 3 μm thick sections from formalin-fixed paraffin-embedded tissues were taken on poly-L-lysine-coated slides. IHC staining was performed manually using a rabbit monoclonal antibody, following the steps mentioned in the supplied kit. Cytoplasmic IHC staining of KRAS protein was subjectively scored under a light microscope, and the percentage of stained tumour cells (brown colour) was expressed using established criteria as follows: 3+ when most cells (>50%) were strongly stained, 2+ when 25-50% of cells were moderately stained, 1+ when the staining was focal (<25%) and weak, and no stained cells were considered negative or 0 (6).

Cytoplasmic IHC staining of the BRAF protein was subjectively scored under a light microscope, and the percentage of stained tumour cells (brown colour) was expressed based on previously established criteria as follows: 3+ for strong staining, 2+ for moderate staining, and 1+ for weak staining. The staining intensity of the anti-BRAF V600E (VE1) antibody in tumour cells was recorded on a 0-3 scale. A score of 3+ was assigned for strong cytoplasmic staining when more than 50% of cells were stained intensely, 2+ for medium cytoplasmic staining when 31-50% of cells were stained, and 1+ for weak cytoplasmic staining when 11-30% of cells were stained. The absence of staining or less than 10% of stained cells was scored as 0. Additionally, any nuclear staining and the percentage of tumour cells stained positive with the anti-BRAF V600E (VE1) antibody were recorded. Positive BRAF V600E staining criteria included unequivocal, diffuse, uniform cytoplasmic staining with an intensity of 1 or higher in the majority of malignant cells. Cases were considered negative for BRAF V600E mutation if they showed no staining or weak, cytoplasmic, non granular, uniform staining (10).

Statistical Analysis

For statistical analysis, the data were entered into MS excel. For descriptive purposes, the mean±SD, range, and percentage were used. The Chi-square test was used to determine the significance of the study using Statistical Package for Social Sciences (SPSS) version 20.0. The significance level was set at a p-value <0.05.

Results

Epidemiological and histological profile: The majority of 22 cases (84.61%) were conventional adenocarcinoma, while 4 cases (15.38%) were mucinous carcinoma. It was observed that the majority of cases were males, accounting for 65.38%, while females constituted 34.63% of the cases. The male-to-female ratio was 1.9:1. The most common age group affected was 51-60 years (38%), followed by 61-70 years (23%). The mean age at presentation was 53.69 years. The highest risk factor for Colorectal Cancer (CRC) in the present study was cigarette smoking (43.31%), followed by obesity (30.76%), alcohol consumption (19.23%), and a family history (7.69%) of carcinoma. The majority of people were non vegetarian (80.77%), while the rest were vegetarian. CRCs mostly occurred in the rectum with 11 cases (42.30%), followed by the ascending colon with 9 cases (34.62%). Gross examination revealed that the majority of tumours showed ulceroproliferative growth (57%), followed by infiltrative growth in 23% of cases. Among the 22 cases of adenocarcinoma, the majority were moderately differentiated adenocarcinoma (63.64%), 31.81% were well-differentiated adenocarcinoma, and 4.55% were poorly-differentiated adenocarcinoma (Table/Fig 1)a-d. Most cases belonged to the T3 stage (69%), followed by T2 (19%). Thirteen cases showed lymphovascular invasion, and three cases showed perineural invasion. Lymph nodes of 11 cases (42.31%) exhibited metastatic carcinomatous deposits, while 6 cases (23.08%) showed reactive hyperplasia. Nodal status could not be assessed in approximately 9 cases (34.61%).

KRAS

In the present study, it was observed that the majority of 15 cases (58%) were KRAS positive, and 11 cases (42%) were KRAS negative (Table/Fig 2). Six cases (23%) had a score of 3+, 8 cases (31%) had a score of 2+, and 1 case (4%) had a score of 1+ [Table/Fig-3a-d]. Out of a total of 15 KRAS-positive CRC cases, 13 cases were G2 and G3, moderately and poorly differentiated adenocarcinoma (87%), whereas out of a total of seven KRAS-negative adenocarcinoma cases, two were G2 and G3 (29%). There was a significant association between the expression of KRAS and moderately and poorly differentiated adenocarcinoma, i.e., Grade-2 and 3 tumours (p-value 0.006) (Table/Fig 4). Out of a total of 15 KRAS-positive cases, 14 cases showed high T staging (T3 and T4), accounting for around 93%. However, out of a total of 11 KRAS-negative cases, six cases showed high T staging (54%). The association between KRAS expression and high T stage was found to be statistically significant with a p-value of 0.02 (Table/Fig 5).

BRAF

It was observed that 10 cases (38.46%) showed BRAF positivity, while 16 cases (61.54%) were negative for BRAF (Table/Fig 3). In (Table/Fig 2), 4 cases (15%) showed a score of 3+, 5 cases (19%) showed 2+, and 1 case (4%) showed a score of 1+. Among the 10 BRAF-positive cases, 3 cases showed mucinous histology (30%), whereas among the 16 BRAF-negative cases, only 1 case showed mucinous histology (6%). There was no significant association found between BRAF positivity and mucinous or non mucinous carcinoma (p-value 0.26). Out of a total of 7 BRAF-positive conventional adenocarcinoma cases, 4 cases were G2 and G3, moderately and poorly differentiated adenocarcinoma (57%). Among the 15 BRAF-negative conventional adenocarcinoma cases, 11 were G2 and G3 adenocarcinoma (73%). There was no significant correlation between the expression of BRAF and the histological grading of tumours.

Out of the total 26 cases of CRC, only 4 cases showed both KRAS and BRAF positivity (15%) (Table/Fig 6). Among the 10 BRAF-positive cases, 9 cases (90%) showed high T staging (T3 and T4). However, out of the 16 BRAF-negative cases, 11 cases (68.75%) showed high T staging (Table/Fig 5). The association between BRAF expression and the high T stage is not statistically significant, with a p-value of 0.21. No association between KRAS and BRAF expression was observed in CRC. Out of a total of 21 cases where KRAS and BRAF were positive in anyone/both, 20 cases showed high T stage (T3 and T4) and/or metastatic lesions. The association between them is statistically significant, with a p-value of 0.001.

Discussion

Rectum was the site with the highest occurrence of carcinoma, accounting for 11 cases (42.3%) in the present study. This finding is consistent with other studies by Patra T et al., where 46.2% of carcinomas occurred in the rectum, and Hajmanoochehri F et al., where 55% were rectal carcinomas (11),(12). Regarding the histological subtypes of Colorectal Cancer (CRC), the present study observed that adenocarcinoma-usual type accounted for 84.6% and mucinous type accounted for 15.4%. This is in line with a study by Hajmanoochehri F et al., where the majority of cases included the conventional type of adenocarcinoma (12).

BRAF plays a crucial role in activating the RAS/RAF/MAPK/ERK signalling cascade, which regulates cellular growth, proliferation, differentiation, apoptosis, and cell survival (13),(14). There are approximately 30 different BRAF mutations, with the V600E mutation being the most common (15). Both of these mutations are oncogenic driver mutations responsible for initiating and maintaining tumours (16),(17). In the present study, it was observed that 15 cases (58%) were KRAS positive, while 11 cases (42%) were KRAS negative. This is consistent with findings by Payandeh M et al., and Dinu D et al., which showed KRAS mutation positivity in 30-50% of CRC cases (17),(18).

Of the 15 KRAS-positive cases, 14 cases showed high T staging (T3 and T4), accounting for approximately 93%. However, out of the 11 KRAS-negative cases, six cases showed high T staging (54%). The association between KRAS and high T-stage CRC was found to be statistically significant with a p-value of 0.02. According to Dinu D et al., KRAS mutation is associated with poor survival and increased tumour aggressiveness, specifically with higher T-stage in CRC (18). This finding aligns with authors observations. However, Ogino S et al., stated that there is no significant difference in survival rates between KRAS-mutated and wild-type CRC (19). In the present study, it was observed that 10 cases (38%) were BRAF positive, while 16 cases (62%) were BRAF negative. However, most studies to date, such as Barras D et al., (2015), have shown that BRAF mutation is found in approximately 10% of CRC cases (20). This does not align with the present study. Grassi E et al., also demonstrated that the incidence of BRAF mutation is around 8-12% in colorectal cancer patients (21).

Out of a total of 10 BRAF-positive cases, 3 cases showed mucinous histology (30%). Among the 16 BRAF-negative cases, only 1 case showed mucinous histology (6%). The association between BRAF positivity and mucinous histology was not statistically significant (p-value=0.1), but a noticeable trend was evident from the results. Caputo F et al., also pointed out that BRAF mutation is associated with female sex, advanced age, proximal colon involvement, poorly differentiated tumours, and mucinous histology (22). Among the total of 10 BRAF-positive cases, the proximal colon was involved in six cases (60%), while the distal colon including the rectum was involved in four cases. However, out of the 14 BRAF-negative cases, the proximal colon was involved in six cases (43%). Although the difference is not statistically significant, there is a clear predilection for BRAF-positive cases to involve the proximal colon. Thiel A and Ristimäki A stated that BRAF mutation is associated with proximal colon involvement and higher-grade carcinoma (23). Missiaglia E et al., also commented that proximal colon cancers often exhibit mucinous histology and express BRAF mutation (24). This finding somewhat supports the present study results. Tanaka H et al., stated that BRAF is mutated in most right-sided colon cancers, and mucinous histology is common in them (25).

Out of the total of 10 BRAF-positive cases, nine cases showed high T staging (T3 and T4), which is around 90%. Conversely, out of the 16 BRAF-negative cases, 11 cases showed high T staging, approximately 68%. However, the association between BRAF mutation and high T staging is not statistically significant, with a p-value of 0.21. According to Caputo F et al., BRAF mutations are often associated with advanced stages of CRC (22). This is in accordance with the present study. Yuan ZX et al., observed that the frequency of BRAF mutation is higher in stages 3 and 4 compared to stages 1 and 2 (26). These findings correlate with the present study results.

Out of a total of 21 cases where KRAS and BRAF were positive, 20 cases showed either high T stage (T3 and T4) or metastatic lesions (95%). In contrast, out of a total of five cases where both KRAS and BRAF were negative, only one case showed a high T stage or metastatic lesion (20%). The association is significant (p-value=0.001). Combining the KRAS and BRAF mutation status, if anyone or both come positive, it is highly suspicious that the patient has an aggressive lesion in terms of higher tumour stages. Conversely, if both come negative, it is likely that the patient does not have an aggressive tumour, possibly T1/T2 lesions, and is non metastatic in nature. Therefore, combining both KRAS and BRAF testing can better diagnose aggressive/invasive tumours and predict possible poor outcomes or poor responses to therapy.

Out of a total of 15 KRAS-positive CRC cases, 13 cases were Grade-2/3 adenocarcinoma (87%), whereas out of a total of seven KRAS-negative adenocarcinoma cases, two were Grade-2/3 tumours (29%). The association between KRAS mutation and combined moderately and poorly differentiated adenocarcinoma is highly significant (p-value=0.006). Hence, tumour grading can be predicted from the mutational status and prognosis as well.

Among the 10 BRAF-positive cases, lymphovascular invasion was found in six cases (60%), whereas out of the 16 BRAF-negative cases, lymphovascular invasion was seen in seven cases (43%). Out of the total 15 KRAS-positive cases, lymphovascular invasion was seen in eight cases (53%), whereas out of a total of 11 KRAS-negative cases, lymphovascular invasion was seen in five cases (45%). This also supports authors findings. Guo TA et al., stated that BRAF mutation is associated with more lymphovascular invasion, poor differentiation, and positive tumour deposit (27). KRAS mutations at codon 13 are more prone to metastasize to more than two organs, leading to higher recurrence rates and lower survival rates, according to Pereira AA et al., (28). These findings support the present research. Pereira AA et al., identified 494 mCRC patients, of which 202 (41%) had tumours with KRAS mutations. They found that KRAS mutations were associated with a twofold greater odds of developing lung metastases during the disease course in patients with liver-limited metastatic CRC at diagnosis (72% vs. 56%, p=0.007). Lung metastasis was more likely to develop in patients whose tumours had a KRAS mutation compared to those without a KRAS mutation. This finding may influence decision-making regarding surgical resection of metastatic disease. Modest DP et al., also reported a similar finding in 2011 (29). This pooled analysis suggests that metastatic RC is a heterogeneous disease, which appears to be defined by KRAS mutations of the tumour.

Out of the total 26 cases, four cases showed both KRAS and BRAF positivity (15%). Previously, KRAS and BRAF were thought to be mutually exclusive. However, concomitant mutation has now been identified in multiple cases, although the clinical significance is yet to be established, as per the opinion of Midthun L et al., (30). Sahin IH et al., mentioned that concomitant KRAS and BRAF mutation is rarely found (0.001%). Larki P et al., stated that KRAS and BRAF are associated with more severe disease when present together, so BRAF testing is highly advisable when the tumour is already KRAS positive (31). According to them, the presence of both mutations simultaneously signifies the polyclonal nature of the tumour cells and heterogeneous tumour biology. It also indicates an increased incidence of transmural invasion in the tumours.

Based on the study findings, authors suggest that both KRAS and BRAF mutations should be tested in all pre/postoperative biopsies, surgically resected specimens, and metastatic lesions. This will enable authors to diagnose aggressive tumours, identify polyclonal and biologically heterogeneous lesions, and make more informed decisions regarding chemotherapy.

Limitation(s)

The present study included only a small population (26 patients) who attended a tertiary care hospital. The duration of the present study was 18 months, which involved data collection, immunohistochemistry, and data analysis. Therefore, authors faced time constraints in reaching a larger sample size. In several aspects, authors were unable to establish a statistically significant association due to the small sample size. Hence, a multicentre trial involving a larger sample size and a representative study population is needed to obtain conclusive results, allowing for the generalisation of the prognostic significance to the population.

Conclusion

The immunohistochemical expression of KRAS was positive in the majority of the cases, showing a significant correlation between KRAS expression and both moderately and poorly differentiated carcinoma (combined G2 and G3) as well as a high pathological TNM T stage (T3 and T4) in CRC. The most prevalent cytoplasmic staining pattern in both KRAS-positive and BRAF-positive CRC is 2+. If either KRAS or BRAF (or both) is positive in CRC cases, there is a high chance of aggressive tumours, indicated by high TNM T stage (T3 and T4) and/or metastatic disease. KRAS IHC biomarkers should be included in the standard diagnostic protocol for colorectal cancer, as they help screen for KRAS-positive CRC cases that are resistant to targeted immunotherapy. Appropriate chemotherapy can then be initiated based on these findings.

References

1.
Fleming M, Ravula S, Tatishchev SF, Wang HL. Colorectal carcinoma: Pathologic aspects. J Gastrointest Oncol. 2012;3(3):153-73.
2.
Ferlay J, Soerjomataram I, Dikshit R, Eser S, Mathers C, Rebelo M, et al. Cancer incidence and mortality worldwide: Sources, methods and major patterns in GLOBOCAN 2012. International Journal of Cancer. 2015;136(5):E359-86. [crossref][PubMed]
3.
Guraya SY. Association of type 2 diabetes mellitus and the risk of colorectal cancer: A meta-analysis and systematic review. World Journal of Gastroenterology. 2015;21(19):6026-31. [crossref][PubMed]
4.
Notarangelo M. Exploiting extracellular vesicles for ultrasensitive detection of cancer biomarkers from liquid biopsies.
5.
De Roock W, Claes B, Bernasconi D, De Schutter J, Biesmans B, Fountzilas G, et al. Effects of KRAS, BRAF, NRAS, and PIK3CA mutations on the efficacy of cetuximab plus chemotherapy in chemotherapy-refractory metastatic colorectal cancer: A retrospective consortium analysis. The Lancet Oncology. 2010;11(8):753-62. [crossref][PubMed]
6.
Elsabah MT, Adel I. Immunohistochemical assay for detection of K-ras protein expression in metastatic colorectal cancer. Journal of the Egyptian National Cancer Institute. 2013;25(1):51-56. [crossref][PubMed]
7.
Estrella JS, Tetzlaff MT, Bassett Jr RL, Patel KP, Williams MD, Curry JL, et al. Assessment of BRAF V600E status in colorectal carcinoma: Tissue-specific discordances between immunohistochemistry and sequencing. Molecular Cancer Therapeutics. 2015;14(12):2887-95. [crossref][PubMed]
8.
Tsong WH, Koh WP, Yuan JM, Wang R, Sun CL, Yu MC. Cigarettes and alcohol in relation to colorectal cancer: The Singapore Chinese Health Study. British Journal of Cancer. 2007;96(5):821-27. [crossref][PubMed]
9.
International Agency for Research on Cancer. WHO Classification of Tumours Editorial Board. Digestive System Tumours. 2019.
10.
Dvorak K, Higgins A, Palting J, Cohen M, Brunhoeber P. Immunohistochemistry with anti-BRAF V600E (VE1) mouse monoclonal antibody is a sensitive method for detection of the BRAF V600E mutation in colon cancer: Evaluation of 120 cases with and without KRAS mutation and literature review. Pathology & Oncology Research. 2019;25(1):349-59. [crossref][PubMed]
11.
Patra T, Mandal S, Alam N, Murmu N. Cliniopathological trends of colorectal carcinoma patients in a tertiary cancer center in eastern India. Clinical Epidemiology and Global Health. 2018;6:39-43. [crossref]
12.
Hajmanoochehri F, Asefzadeh S, Kazemifar AM. Clinicopathological features of colon adenocarcinoma in Qazvin, Iran: A 16-year study. Asian Pacific Journal of Cancer prevention. 2014;15(2):951-55. [crossref][PubMed]
13.
Wan PT, Garnett MJ, Roe SM, Lee S, Niculescu-Duvaz D, Good VM. Cancer Genome Project; Jones, CM; Marshall, CJ. Springer C, Barford D, Marais R. Mechanism of Activation of the RAF-ERK Signaling Pathway by Oncogenic Mutations of B-RAF, Cell. 2004;116(6):855-67. [crossref][PubMed]
14.
Ascierto PA, Kirkwood JM, Grob JJ, Simeone E, Grimaldi AM, Maio M, et al. The role of BRAF V600 mutation in melanoma. J Transl Med. 2012;10(1):01-09. [crossref][PubMed]
15.
Clarke CN, Kopetz ES. BRAF mutant colorectal cancer as a distinct subset of colorectal cancer: Clinical characteristics, clinical behavior, and response to targeted therapies. Journal of Gastrointestinal Oncology. 2015;6(6):660-67.
16.
Han CB, Li F, Ma JT, Zou HW. Concordant KRAS mutations in primary and metastatic colorectal cancer tissue specimens: A meta-analysis and systematic review. Cancer Investigation. 2012;30(10):741-47. [crossref][PubMed]
17.
Payandeh M, Amirifard N, Sadeghi M, Shazad B, Farshchian N, Sadeghi E, et al. The prevalence of KRAS mutation in colorectal cancer patients in the Iranian population: A systematic review and meta-analysis study. Biomedical Research and Therapy. 2017;4(10):1693-704. [crossref]
18.
Dinu D, Dobre M, Panaitescu E, B̨rla? R, Iosif C, Hoara, et al. Prognostic significance of KRAS gene mutations in colorectal cancerРA preliminary study. Journal of Medicine and Life. 2014;7(4):581-58.
19.
Ogino S, Meyerhardt JA, Irahara N, Niedzwiecki D, Hollis D, Saltz LB, et al. KRAS mutation in stage III colon cancer and clinical outcome following intergroup trial CALGB 89803. Clinical Cancer Research. 2009;15(23):7322-29. [crossref][PubMed]
20.
Barras D. BRAF mutation in colorectal cancer: An update: supplementary issue: biomarkers for colon cancer. Biomarkers in Cancer. 2015;7:BIC-S25248. [crossref][PubMed]
21.
Grassi E, Corbelli J, Papiani G, Barbera MA, Gazzaneo F, Tamberi S. Current therapeutic strategies in BRAF-Mutant metastatic colorectal cancer. Front Oncol. 2021:11:01-06. [crossref][PubMed]
22.
Caputo F, Santini C, Bardasi C, Cerma K, Casadei-Gardini A, Spallanzani A, et al. BRAF-Mutated Colorectal Cancer: Clinical and Molecular Insights. International Journal of Molecular Sciences. 2019;20(21):5369. [crossref][PubMed]
23.
Thiel A, Ristimäki A. Toward a molecular classification of colorectal cancer: The role of BRAF. Frontiers in Oncology. 2013;3:281. [crossref][PubMed]
24.
Missiaglia E, Jacobs B, D’ario G, Di Narzo AF, Soneson C, Budinska E, et al. Distal and proximal colon cancers differ in terms of molecular, pathological, and clinical features. Annals of Oncology. 2014;25(10):1995-2001. [crossref][PubMed]
25.
Tanaka H, Deng G, Matsuzaki K, Kakar S, Kim GE, Miura S, et al. BRAF mutation, CpG island methylator phenotype and microsatellite instability occur more frequently and concordantly in mucinous than non-mucinous colorectal cancer. International Journal of Cancer. 2006;118(11):2765-71. [crossref][PubMed]
26.
Yuan ZX, Wang XY, Qin QY, Chen DF, Zhong QH, Wang L, et al. The prognostic role of BRAF mutation in metastatic colorectal cancer receiving anti-EGFR monoclonal antibodies: A meta-analysis. PLoS one. 2013;8(6):e65995. [crossref][PubMed]
27.
Guo TA, Wu YC, Tan C, Jin YT, Sheng WQ, Cai SJ, et al. Clinicopathologic features and prognostic value of KRAS, NRAS and BRAF mutations and DNA mismatch repair status: A single-center retrospective study of 1,834 Chinese patients with Stage I–IV colorectal cancer. International Journal of Cancer. 2019;145(6):1625-34. [crossref][PubMed]
28.
Pereira AA, Rego JF, Morris V, Overman MJ, Eng C, Garrett CR, et al. Association between KRAS mutation and lung metastasis in advanced colorectal cancer. British Journal of Cancer. 2015;112(3):424-28. [crossref][PubMed]
29.
Modest DP, Stintzing S, Laubender RP, Neumann J, Jung A, Giessen C, et al. Clinical characterization of patients with metastatic colorectal cancer depending on the KRAS status. Anti-Cancer Drugs. 2011;22(9):913-18. [crossref][PubMed]
30.
Midthun L, Shaheen S, Deisch J, Senthil M, Tsai J, Hsueh T. Concomitant KRAS and BRAF mutations in colorectal cancer. Journal of Gastrointest Oncol. 2019;10(3):577-81. [crossref][PubMed]
31.
Larki P, Gharib E, Taleghani MY, Khorshidi F, Nazemalhosseini-Mojarad E, Aghdaei HA. Co-existence of KRAS and BRAF mutations in colorectal cancer: A case report supporting the concept of tumoural heterogeneity. Cell Journal (Yakhteh). 2017;19(Suppl 1):113-17.

DOI and Others

DOI: 10.7860/JCDR/2023/63553.18398

Date of Submission: Apr 27, 2023
Date of Peer Review: Jun 16, 2023
Date of Acceptance: Aug 23, 2023
Date of Publishing: Sep 01, 2023

AUTHOR DECLARATION:
• Financial or Other Competing Interests: None
• Was Ethics Committee Approval obtained for this study? Yes
• Was informed consent obtained from the subjects involved in the study? Yes
• For any images presented appropriate consent has been obtained from the subjects. No

PLAGIARISM CHECKING METHODS:
• Plagiarism X-checker: May 01, 2023
• Manual Googling: Jul 10, 2023
• iThenticate Software: Aug 19, 2023 (13%)

ETYMOLOGY: Author Origin

EMENDATIONS: 7

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